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AI-Powered Embryo Selection for IVF - Medical case study showcasing Medical AI, Deep Learning, Video Classification expertise
Medical
March 2025

AI-Powered Embryo Selection for IVF

Video transformer system for embryo viability prediction from time-lapse microscopy. Seven specialized algorithms covering segmentation, grading, and outcome prediction.

Medical AIDeep LearningVideo ClassificationPyTorch LightningHealthcare

Abstract

This project presents a comprehensive AI system for automated embryo analysis and outcome prediction, developed as Lead Computer Vision Algorithm Developer (2023-2024). The system employs state-of-the-art video transformer architectures to analyze time-lapse microscopy videos of embryos, providing objective, data-driven predictions for embryo viability.


The Clinical Challenge

In vitro fertilization (IVF) clinics face a critical decision: which embryo has the highest chance of successful implantation? Traditional embryo assessment relies on manual morphological evaluation by embryologists, which:

  • Is subjective and varies significantly between observers
  • Cannot effectively capture temporal development patterns
  • Misses subtle indicators of viability visible only across time

  • Algorithm Portfolio

    I developed a comprehensive suite of seven specialized algorithms:

    1. End-to-End Video Classification System

    Architecture: Video Swin Transformer (3D hierarchical vision transformer)

    Tasks: Pregnancy prediction, transfer recommendation, genetic testing outcome

    2. Embryo Segmentation Module

    Architecture: U-Net encoder-decoder structure

    Application: Background removal and normalization

    3. Blastocyst Classification

    Deep convolutional networks for Day 5-6 embryo quality assessment

    4. Comprehensive Embryo Grading System

    Multi-criteria quality scoring with clinical integration

    5. Morphokinetic Event Detection

    Automated detection of developmental milestones using Siamese networks

    6. Static Image Prediction Models

    Pregnancy outcome prediction from single timepoints

    7. Pronuclei Detection System

    Early-stage fertilization quality assessment


    Video Swin Transformer Architecture

    The core innovation is applying Video Swin Transformers to embryo viability prediction—modeling both spatial features and temporal dynamics critical for understanding embryo development.

    Key Advantages:

  • Hierarchical Multi-Scale Processing
  • Efficient Attention Mechanisms
  • Long-Range Temporal Modeling
  • Transfer Learning from large-scale video datasets

  • Clinical Impact

    The system significantly improves IVF success rates by providing objective, consistent embryo assessment, reducing the number of transfer attempts needed per pregnancy and improving overall clinical outcomes.

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